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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATAGAGAGGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttccttcctaccctgctcgatactatattcttgttccactgttgtatagccaactcatgatagcagttgagaataaagtaaagagtggtttctaagtttcttctttcacag

Basic information

species Arabidopsis thaliana
transcript AT4G26570.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 7
TTTCATAGAGAGGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttccttcctaccctgctcgatactatattcttgttccactgttgtatagccaactcatgatagcagttgagaat--aaagtaaagagtggtttctaagtttcttctttcacag
                   || ||||| ||||| || ||||| ||||||||||| || ||||| || || || ||||| |||||||| |||||||| ||||| || | |  |       |      |  | | || | |||  ||   ||||| |     | ||  |   |||||  | |     ||||  |||  ||   |                 
-------------------GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTGATGAAATTATAGAGAGCATAATCGATAAGgtatgttacggtttccatttatattttgttgtgtt-tggttatacc-ctgtattggatggt-atttttttagttggtattttgtggtaatcagtaattctcag----------------

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 8
TTTCATAGAGAGGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcct----tcctaccctgctcgatactatattcttgttc--cactgttgtatagccaactcatgatagcagttgagaataaagtaaagagtggtttc-----taagtttcttctttcacag-
                    ||||||||||||| || |||||||||||||| || ||||||||||| ||||| ||  | ||||| |||||||| |||||||| |    |||    | ||| |     |  | |||  ||||  ||   |||     | |    |     |  |     ||  ||| |     | || | |||||     ||| |||    ||||  || 
--------------------TGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGGttttacccctattcttctatcacttacatttctaagttctaattgtgcacaagaatcttaagagtctctttttctctttttgaaaactcacatgaatagtttcgacattaaattttggatttcttaga

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 7
TTTCATAGAGAGGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcc--ttcctaccctgctcgatactatattcttgt--tccac-tgttgtatagccaactcatgatagcagttgagaataaagtaaagagtggtttc-----taagtttcttctttcacag-
                   |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| ||  | ||||| |||||||| |||||||| |    ||  || |||       |  | |||  ||||  |  | ||| ||     ||     |||||  |  |  ||   ||      |  || | |||||     ||| |||    ||||     
-------------------GTGAAGCAAATGGTAGTTGCTACACTTGCTGAATCTGGCATGAACCTATCAGATGATGTTATAGAAAGTATAATTGACAAGgttttaccccattttctataacttacatttctaagttctaatagtgcacatgagtcttaagagtctcattttctctttttgaaaactcacatgga-tagtttcaacattaaattttggatttctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125010993|gb|EL083262.1|EL083262
EST:     ATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAG                         ACATTTGAGGAAGCTGATACAAAAC
genomic: ATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcc ... tctttcacagACATTTGAGGAAGCTGATACAAAAC
EST: gi|86076567|gb|DR372324.1|DR372324
EST:     AGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAG                         ACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAG
genomic: AGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcc ... tctttcacagACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAG
EST: gi|125286970|gb|EL301055.1|EL301055
EST:     TGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAG                         ACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAG
genomic: TGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcc ... tctttcacagACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAG
EST: gi|125031016|gb|EL103285.1|EL103285
EST:     AGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAG                         ACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATA
genomic: AGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGgtgtggttcc ... tctttcacagACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATA