1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttatcttgttcaaatgcatatgtctttagattcttccaagtggttcgaaagttcttacattttattgttatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATT
species | Arabidopsis thaliana |
transcript | AT4G26570.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG GCATGCAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGEST: gi|86019689|gb|DR315435.1|DR315435
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
EST: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGEST: gi|125092371|gb|EL150194.1|EL150194
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
EST: TGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCAEST: gi|152035921|gb|BP864717.2|BP864717
genomic: TGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCA
EST: GGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
ctttagattcttccaagtggttcgaaagttcttacattttattgttatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATT
ttcttac putative branch site (score: 2)
aaagttcttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttatcttgttcaaatgcatatgtctttagattcttccaagtggttcgaaagttcttacattttattgttatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC