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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatcttgttcaaatgcatatgtctttagattcttccaagtggttcgaaagttcttacattttattgttatttaacag

Basic information

species Arabidopsis thaliana
transcript AT4G26570.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86019690|gb|DR315436.1|DR315436
EST:     TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG                         GCATGCAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
EST: gi|86019689|gb|DR315435.1|DR315435
EST:     TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG                         GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
EST: gi|125092371|gb|EL150194.1|EL150194
EST:     TGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG                         GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCA
genomic: TGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCA
EST: gi|152035921|gb|BP864717.2|BP864717
EST:     GGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG                         GCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG
genomic: TGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAGgtacttatct ... tatttaacagGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGG