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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G26570.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttg---atctgagaaaccatctatacaattt---atctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag
|||||||||||||| || ||||||||  | || ||||| || ||||| ||||| ||||| || |||||||||| ||||||  | || || ||||||||||||  || |  ||  |     || |    || | |     ||||||| || ||    ||    | ||| ||   ||    |  |        |||    || |||                      
TTGTTTGACACAAAACACAATGGAATTTTAGGATTTGATGAATTTGCTCGTGCACTCTCAGTATTTCATCCAAGTGCTCCACTTGATGAGAAGATTGACTgtgagt-tcagacgtactgtagctagatattttactcctcatctatgcagttctaaattatgtattgtcacaata---atggcttggagcttatttgcaaaagt----------------------

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttg-atcttacaaagttg-atctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag
||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||| || |||||||| ||||||||| | || || || |||||||||  |   | |  | ||  | | | | |  |  |    || ||||| |  |||    || |       ||  |  | |       |||| || ||  ||                       
TTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGACTgtgagctctcgtgttttgtagattggtactttggctttcaactataaatgtta---aatctaagttctctg-acatgattagcctaataacagtaggagcctta------------------

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G173424_T02 (Zea mays), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttg-atcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcacta-acagttaccgggaacattgttttgcag
|| |||||||||||||| | ||||||  |||| ||||| || ||||| ||||||||||| || |||||||| ||||||||| | || || || ||||| |||  |     |  | ||     || ||| ||| ||     || | ||| |   || |       ||| || || |||   ||   | |||| || |   ||| |   |   |          
TTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctcccgtgttttgttttgtagat-tgataatttggctct-caact---ctaa-------atgttaaatctaagttatattacatcattacatgcttagcttaatggt----------

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttgatctgagaaaccatctatacaattt-atctgatgttgacatgctacatgtaacccatg-aaatatcacta-acagttaccgggaacattgttttgcag-----------------------------------------------------------------------
|||||||| |||||||| ||||| ||||| |  ||||| |||||||| ||||||||||||||||||||||| ||||| || || || || |||||||| |||| |  |   |  |     ||  ||  | ||  | |   | |||  ||| |||||   ||   |||  |   | |     || |||     ||| |   ||           |||  |  |                                                                        
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaat-gtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtc---------tttgatcttacaaagttgatct----gagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag-----------------------------------
 | |||||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||| || |||||||||||||| || || || || ||||| || |||| ||          |||   | |||||   | || |      |||    ||||||   | | | | |  || | |  | |     |||       |  ||  |||   |       |||||| ||    |                                    
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaaga-acaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctt-tgatcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag----------------------------------
|| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| || || ||||| ||||| ||||| || || ||||| || |||| ||  |   || ||         ||             || | | ||| | | |  || | |  | |     ||   |    |  ||  |||   |    |  ||| || ||    |                                   
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaata-acaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacg--tctttgat-cttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag-----------------------------------------------
||||||||||||||||||| ||||||||| |  ||  | |||||||| | ||||||||||||||||||||| |  ||  | || || || |||||||| |||| |  |   | ||  |||  |||   || | ||| | | ||||  |||   |  |      || |   ||  |||||      | |||||  | |           |   ||||| |  |                                                
TTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATAAGATTGAGTgtaagagtgactaatatttattaag---attttagatatcttctagccaacaaaattagaaaggaaagagtatttgtaaaattatagatatctgttatttccctttctacatttgttattgatagtaatttatatggttgttggggattcctaactttcccttttttcag

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtct--ttgatcttacaaag--ttgatctgagaaaccatctatacaattt--atctgatgttgacatgctacatgtaacccatgaa---atatcactaacagttaccg-ggaacattgttttgcag-------------------------------------------------------------
|||||||| |||||||| || || ||||| |  ||||| |||||||| || |||||||||||||||||||| ||||| || || || || |||||||| |||| |  |     || ||   |||  || | ||  |    |  || |   || |   | |    | |  |    |  | |     | | |   | ||||      ||| | |  |   |||  ||| |                                                               
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagtt--accgggaacattgttttgcag--------------------------------------------------------------------------------
||||||||||||||||| ||||||||||| |  ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||| ||  | | |  ||  | |   |  | ||      | | |    | | | ||| ||      |  | |   |      || | |  ||  ||| ||         || ||  ||| |                                                                                  
TTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAGTTTGCGCGTGCCCTCTCTGTCTTTCATCCCAATGCACCCATTGAAGACAAAATTGACTgtaagttgtagttagtaagaggacaaaataagttcttgtgtgtgtg-tgtgtgtga-gtgagtgagtgagagaga------gagagaggacagacaatttggtttatgactttagtttactactcttatcttctacttcctgatgatttcatgctgatgcttattgatgtatgtttgggatgccaaatcatttcttttgcag

upper sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag
|||||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||| || || || || || || ||||||||||| |||| ||  ||    | | |   |||||     |||  ||| | | ||| | |    |||  || |  | ||   |     ||   | ||| |   |  ||    |||||           
TTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctt----tcaaatgcttgatt----aaattatccacataatgtgttctttgt--acctctttca-acagtggttgtggt-tcattttaacataatatgaacaaac--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076567|gb|DR372324.1|DR372324
EST:     TGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACT                         TTTCGTTTCAGCTATATGATCTTAAGCAGCAAGGTTTCATAGAGAGGCAAG
genomic: TGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtcttt ... tgttttgcagTTTCGTTTCAGCTATATGATCTTAAGCAGCAAGGTTTCATAGAGAGGCAAG