1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccttgaccaatccatatgtcaatttcattccaacgaaatgtcctgaaagaatcctttgtatatttgatctcttactctcctttttccccccaaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGGTAGGACTGCGTTCATGTAAAGATTAGTTTCAATGTAA
species | Arabidopsis thaliana |
transcript | AT4G26430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGCACCAG CAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGEST: gi|86080018|gb|DR375775.1|DR375775
genomic: AACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGgtatgtgctc ... caaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAG
EST: AACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAG CAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGEST: gi|164056417|gb|ES161834.1|ES161834
genomic: AACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGgtatgtgctc ... caaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAG
EST: ACGACAAATTGCTGATGTCTTACCTAGTCAATGATCACGAATTGTACCAG CAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGEST: gi|116443197|gb|EG485789.1|EG485789
genomic: ACGACAAATTGCTGATGTCTTACCTAG-CAATGATCACGAATTGTACCAGgtatgtgctc ... caaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACG
EST: AACGACAAATTGCTGATGTCTTACCTAGCA-TGATCACGAATTGCACCAG CAACATGAACGAG-TGGTTGACAAATTCAACACT
genomic: AACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGgtatgtgctc ... caaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACT
aaagaatcctttgtatatttgatctcttactctcctttttccccccaaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGGTAGGACTGCGTTCATGTAAAGATTAGTTTCAATGTAA
ctcttac putative branch site (score: 3)
tatttgatctcttact CT-rich tract
tttgtatatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgaccaatccatatgtcaatttcattccaacgaaatgtcctgaaagaatcctttgtatatttgatctcttactctcctttttccccccaaaatgcagCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGGTAGGACTGCGTTCATGTAAAGATTAGTTTCAATGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - ccaatcc
- - - - - - - - - - - - - - - -aacgaaa
- - - - - - - - - - - - - - - - - - - - - - gaaagaa