Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGGTATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTgtgagtagtgtagctttaatgtttaatataaatttaattgaatttaggattctcattgtactgatttgttgaggttttcatctacag

Basic information

species Arabidopsis thaliana
transcript AT4G26430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26430.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G028089_T01 (Zea mays), 5'ss of exon 2
ATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGGTATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTgtgagtagt-gtagctttaatgtttaata--taaattta--attgaatttaggat-tctcattgtactgatttgttgaggttt--tcat-ctacag----
||||||||||||||||||||||||||||  | || ||||| || || ||||| || |    |||  | || ||||| ||||||||||| ||||||  |   | |  |    |  | |   | ||| |   |||    | || || || |||||| ||  |   |||   |||  ||||  ||  |    
ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAGCGATGTGCACGACACCGACATGCAAATCCACAAAGCCgtgagtttttacaaccgtttcttcaagtgcttgaatctgtcatttgtgtgagaatgtcacattgtgcttgtgcattggtatttgctcatgttatggagaa

upper sequence: AT4G26430.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G47850.1 (Glycine max), 5'ss of exon 2
ATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGGTATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTgtgagt----agtgtagc------tttaatgtttaatataaatttaattgaatt--tagg-attctcattgtactgatttgttgaggttttcatctacag
||||||||||||||||  |||||||| || |||| |||||||| || || ||||| ||    ||||| ||||||||||| ||||||||||| |||    | | ||||      | | |  || |  || | | | | |  |||  |||| |   |   | ||      ||  |   ||||  |  |  |
ATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgcattatagcaatttgtctcaatttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443197|gb|EG485789.1|EG485789
EST:     ATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCT                         CTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATC
genomic: ATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTgtgagtagtg ... tcatctacagCTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATC