1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatattcttgctcaagtccccactctcggtccctcttcaatttgttaatcaagcttttgtgacctgtcccttgatcttagaatatttctatgtgttttcctacggggaagaaagaattaaaagggtgttagaagatgattttgagcaagagtaatgtggtactaatgacttatgtgattctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAGTTCAATGAAAATTTCTTGAT
species | Arabidopsis thaliana |
transcript | AT4G26430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATAGTAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAG GTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAEST: gi|86080018|gb|DR375775.1|DR375775
genomic: TAATAGCAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAGgtatattctt ... ctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCA
EST: TAATAGCAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAG GTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAEST: gi|125243495|gb|EL257580.1|EL257580
genomic: TAATAGCAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAGgtatattctt ... ctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCA
EST: CTATACCAGCATATTGTCGCTATGCAGAAAG GTGATAAACCTTGTGAGAACTCAGTTEST: gi|116443197|gb|EG485789.1|EG485789
genomic: CTATACCAGCATATTGTCGCTATGCAGAAAGgtatattctt ... ctgcatctagGTGATAAACCTTGTGAGAACTCAGTT
EST: TAATAGTAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAG GTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCA
genomic: TAATAGCAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAGgtatattctt ... ctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCA
atgattttgagcaagagtaatgtggtactaatgacttatgtgattctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAGTTCAATGAAAATTTCTTGAT
tactaat putative branch site (score: 1)
tactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattcttgctcaagtccccactctcggtccctcttcaatttgttaatcaagcttttgtgacctgtcccttgatcttagaatatttctatgtgttttcctacggggaagaaagaattaaaagggtgttagaagatgattttgagcaagagtaatgtggtactaatgacttatgtgattctgcatctagGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAGTTCAATGAAAATTTCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT