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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCGgtaaaaattggttatttgcatcactgattgtcttattgttttatagattataatcttgctaatcctgtctttttgattgttttcaaaatttgaag

Basic information

species Arabidopsis thaliana
transcript AT4G26430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G12890.1 (Glycine max), 5'ss of exon 3
CTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCGgtaaaaattggttat--ttgcatcactgattgtcttattgttttatagattataatcttgctaatcctgtctttttgattgttttcaaaatttgaag---
 ||||||| || ||||||  ||| || ||||||||| | |||||| ||||||||||| | ||||||||||| ||||| | ||| |  ||||| ||||   | |    ||  |||  | | | | | | | |||||||| |  |  | | |      |||         || |         || |||       
TTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGgtacgtaatctccatcattgtgttatttagtatgtgattgttttttcaaccacagttgcaaaaatgaaaaaacattaacaaggaaagaactttagttact

upper sequence: AT4G26430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0015g01950.t01 (Vitis vinifera), 5'ss of exon 3
CTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCGgtaaa-aattggttatttgcatcactgattgtcttattgttttatagattataatcttgctaatcc-tgtctttttgattgttttca-aaatttgaag------
 ||||||| |||||||||   ||||| ||||||||| | |||||  | |||||||||||||| |||||||| |||||||||||||| ||||| ||||   ||    | ||||  |||  |  |  | | | |   |||||     | ||  ||| | ||  |         | || ||    ||| ||||        
TTGATGGATATTAATGAAAGCCCTGTCTATGTTCTTCTCAATCCGTCAATCAATCATGCACAAAAGGATCTCCCTGTGACTATCTATGAAAGTGgtatgtaacccttcatttttatc-ttcttcctttaactcccttataag---tgattctgcaagtctataaaaaaaaaagtgattctgtaaagttgatcttatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443197|gb|EG485789.1|EG485789
EST:     TGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCG                         AATTTCATGTCATTGATGGAATTCCTCAGTCGATGTTCGTGCATACCAGCT
genomic: TGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCGgtaaaaattg ... aaatttgaagAATTTCATGTCATTGATGGAATTCCTCAGTCGATTTTCGTGCATACCAGCT