1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGgttcgtctttttctaaacacactttctctgttgattttatgggtttgcttttgagtcatgggactactttatcactgcaatcaaggtggttaccctttcattattatctgatcacaagtactttttactttctgcag
species | Arabidopsis thaliana |
transcript | AT4G26110.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGGATCTTCAAAACCTGATGGAACAAGATTATGACATTGG ATCTACTATTCGGGAAA-GATTATTCCTCGTGCTGTCTCATGGTTTACTGGEST: gi|124976514|gb|EL049926.1|EL049926
genomic: GAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGgttcgtcttt ... ctttctgcagATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTACTGG
EST: GAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGG ATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCAEST: gi|164225571|gb|ES126315.1|ES126315
genomic: GAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGgttcgtcttt ... ctttctgcagATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCA
EST: GAAAGAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATTGG ATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTACEST: gi|164061863|gb|ES049290.1|ES049290
genomic: GAAAGAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGgttcgtcttt ... ctttctgcagATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTAC
EST: CTGATGGAACAAGATTATGACATTGG ATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTC
genomic: CTGATGGAACAAGATTATGACATCGGgttcgtcttt ... ctttctgcagATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGgttcgtctttttctaaacacactttctctgttgattttatgggtttgcttttgagtcatgggactactttatcactgcaatcaaggtggttaccctttcattattatctgatcacaagtactttttactttctgcag
- GAGGAT
- - - - - - - - - - GATGGA