1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagcctatatgcagttttggtgttcgttttataaacactccaatcataaccatggaatatgagcataacttattgtcatttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTAAAGGATTCAAACTTGAGTTTTTCTTTGACA
species | Arabidopsis thaliana |
transcript | AT4G26110.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAG GTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGEST: gi|124969776|gb|EL043656.1|EL043656
genomic: CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAGgtagcctata ... tttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGG
EST: CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAG GTCACAGAGCGTGATGAAGGGGCTCTCAAAEST: gi|164082684|gb|ES116265.1|ES116265
genomic: CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAGgtagcctata ... tttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAA
EST: GAAAAATAACGATGTTATTTCCGAGGAG GTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGG
genomic: GAAAAATAACGATGTTATTTCCGAGGAGgtagcctata ... tttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGG
aacactccaatcataaccatggaatatgagcataacttattgtcatttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTAAAGGATTCAAACTTGAGTTTTTCTTTGACA
ttattgtcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcctatatgcagttttggtgttcgttttataaacactccaatcataaccatggaatatgagcataacttattgtcatttatgtcagGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTAAAGGATTCAAACTTGAGTTTTTCTTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA