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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaagtgccccaagtatagttgtttcttttttttttttttttcttcatgccacgttagttttttactaatcctttgaaatcgcttaatatttttttttgcagCCATCAATCGGCAACAAG

Basic information

species Arabidopsis thaliana
transcript AT4G26110.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124881799|gb|EH960701.1|EH960701
EST:     CGATGATGATGAGGATGAAGAAGAAAGCAAGACCAAAAAGAAG                         CCATCAATCGGCAACAAG
genomic: CGATGATGATGAGGATGAAGAAGAAAGCAAGACCAAAAAGAAGgtataaagtg ... ttttttgcagCCATCAATCGGCAACAAG
EST: gi|124771782|gb|EH861912.1|EH861912
EST:     ACCAAAAAGAAG                         CCATCAATCGGCAACAAG
genomic: ACCAAAAAGAAGgtataaagtg ... ttttttgcagCCATCAATCGGCAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccacgttagttttttactaatcctttgaaatcgcttaatatttttttttgcagCCATCAATCGGCAACAAG
                                        tattttttttt  CT-rich tract
                             aaatcgcttaatattt  TA-rich tract