1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTTTTTCTTTGACACGAATCCGTATTTTAAGAACACTGTCTTGACAAAGTCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGgtaactacttatactctcttgcaattgttgtatacttttaagtatattctgcttattagctgattgcattgagctgcttattttttttcttcgcttatattgcaaatggattcttattctttcaccattcattttcag
species | Arabidopsis thaliana |
transcript | AT4G26110.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGG GACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAAEST: gi|164130559|gb|ES046365.1|ES046365
genomic: TCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGgtaactactt ... tcattttcagGACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAA
EST: TCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGG GACAGAAATTGATTGGTATCCEST: gi|124932559|gb|EL009806.1|EL009806
genomic: TCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGgtaactactt ... tcattttcagGACAGAAATTGATTGGTATCC
EST: CCACTGCTTGAGAAGGCTATGGG GACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGNTTCTCAAEST: gi|164064261|gb|ES146856.1|ES146856
genomic: CCACTGCTTGAGAAGGCTATGGGgtaactactt ... tcattttcagGACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAA
EST: AAGGCTAT-GG GACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAA
genomic: AAGGCTATGGGgtaactactt ... tcattttcagGACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTTTCTTTGACACGAATCCGTATTTTAAGAACACTGTCTTGACAAAGTCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGgtaactacttatactctcttgcaattgttgtatacttttaagtatattctgcttattagctgattgcattgagctgcttattttttttcttcgcttatattgcaaatggattcttattctttcaccattcattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG