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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATCTGTGAGTTCGAAACGCACGTTAGGTATGCCGTTGAGAATAAACACTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaaatgcacctttgttttccgtcatacctagttagttcatacggctatattagttatgtcaacttgtgtctcttag

Basic information

species Arabidopsis thaliana
transcript AT4G20095.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482081|gb|EG524673.1|EG524673
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482080|gb|EG524672.1|EG524672
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482099|gb|EG524691.1|EG524691
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482093|gb|EG524685.1|EG524685
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482092|gb|EG524684.1|EG524684
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482100|gb|EG524692.1|EG524692
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: gi|116482082|gb|EG524674.1|EG524674
EST:     CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG                         AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATCTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT