1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCATCAAGCTTATTTATTTGTCTTTTTCTCACCGATTACGAAACACTGAATCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctgaaaccgaacttagttggtctgtattttacattggaacagaacttgagatgtctccatttcatcttcttccaaatagttgttgtttttatg...
species | Arabidopsis thaliana |
transcript | AT4G20095.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCCEST: gi|116482080|gb|EG524672.1|EG524672
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCCEST: gi|116482099|gb|EG524691.1|EG524691
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCCEST: gi|116482093|gb|EG524685.1|EG524685
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCCEST: gi|116482092|gb|EG524684.1|EG524684
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCCEST: gi|116482100|gb|EG524692.1|EG524692
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
EST: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAG GGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
genomic: TCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctg ... attaatatagGGTTTATATATTTGCCAAGAAATGGGTAACGGAATGTGGAAGCAAGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCAAGCTTATTTATTTGTCTTTTTCTCACCGATTACGAAACACTGAATCCATTGTATATTCTTCTTGCGATCTCGTCAAATTTCATAGGTGAAGAAGgtgagttctgaaaccgaacttagttggtctgtattttacattggaacagaacttgagatgtctccatttcatcttcttccaaatagttgttgtttttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcttcc