Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTGGTCGAGGAACCATCGCAGAGTAATGAGAAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggatttgattgtggatgtatgaactttaggtctcatcactcatagagatatttgcattttaaagcttatagattctgtgttttgtttagagaga...

Basic information

species Arabidopsis thaliana
transcript AT4G20095.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482081|gb|EG524673.1|EG524673
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482080|gb|EG524672.1|EG524672
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482099|gb|EG524691.1|EG524691
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482093|gb|EG524685.1|EG524685
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCGCCAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482092|gb|EG524684.1|EG524684
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCGCCAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482100|gb|EG524692.1|EG524692
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC