1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
species | Arabidopsis thaliana |
transcript | AT4G20095.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482080|gb|EG524672.1|EG524672
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482099|gb|EG524691.1|EG524691
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482093|gb|EG524685.1|EG524685
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCGCCAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482092|gb|EG524684.1|EG524684
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCGCCAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482100|gb|EG524692.1|EG524692
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
tcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
tccttatttttgtctt CT-rich tract
ttatttttgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-cctacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaga