Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGATGTTGTTGATATGGTACAGATGAAAGATTCAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaaaagacttgatcaccgaaagaaagaggggattttgtttattaggctatatatgatctgtttaaagaaacttggtttttggtgttgtcttgtgtaaacgcag

Basic information

species Arabidopsis thaliana
transcript AT4G20095.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482087|gb|EG524679.1|EG524679
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC
EST: gi|116480973|gb|EG523565.1|EG523565
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCCATTTGAGATGAAGAAGATAGTT
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCCATTTGAGATGAAGAAGATAGTT
EST: gi|116482094|gb|EG524686.1|EG524686
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCG
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCG
EST: gi|116482098|gb|EG524690.1|EG524690
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC
EST: gi|116482095|gb|EG524687.1|EG524687
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC
EST: gi|116480978|gb|EG523570.1|EG523570
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAGAGCCATTTGAGATGAAGAAGATAGTT
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCCATTTGAGATGAAGAAGATAGTT
EST: gi|116480980|gb|EG523572.1|EG523572
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCCATTTGAGATGAAGAAGATAGTT
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCCATTTGAGATGAAGAAGATAGTT
EST: gi|116482076|gb|EG524668.1|EG524668
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCCGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC
EST: gi|116482089|gb|EG524681.1|EG524681
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC
EST: gi|116482091|gb|EG524683.1|EG524683
EST:     AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTG                         CATGCGCATGCGCTGGAGTCTGCAAAGCC
genomic: AGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaa ... gtaaacgcagCATGCGCATGCGCTGGAGTCTGCAAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGATGTTGTTGATATGGTACAGATGAAAGATTCAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCAAACTGgtaaggaaaaaagacttgatcaccgaaagaaagaggggattttgtttattaggctatatatgatctgtttaaagaaacttggtttttggtgttgtcttgtgtaaacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA