Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattggatttgattgtggatgtatgaactttaggtctcatcactcatagagatatttgcattttaaagcttatagattctgtgttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G20095.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482087|gb|EG524679.1|EG524679
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482090|gb|EG524682.1|EG524682
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482096|gb|EG524688.1|EG524688
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482094|gb|EG524686.1|EG524686
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482098|gb|EG524690.1|EG524690
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482095|gb|EG524687.1|EG524687
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482083|gb|EG524675.1|EG524675
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482075|gb|EG524667.1|EG524667
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482089|gb|EG524681.1|EG524681
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGGAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482091|gb|EG524683.1|EG524683
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482084|gb|EG524676.1|EG524676
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482079|gb|EG524671.1|EG524671
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactcatagagatatttgcattttaaagcttatagattctgtgttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAG
                                             ttttgttt  CT-rich tract
             atatttgcattttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattggatttgattgtggatgtatgaactttaggtctcatcactcatagagatatttgcattttaaagcttatagattctgtgttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA