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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatattcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G20095.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482087|gb|EG524679.1|EG524679
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482090|gb|EG524682.1|EG524682
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482096|gb|EG524688.1|EG524688
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482094|gb|EG524686.1|EG524686
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482098|gb|EG524690.1|EG524690
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482095|gb|EG524687.1|EG524687
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482075|gb|EG524667.1|EG524667
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482088|gb|EG524680.1|EG524680
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAAAC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAA-C
EST: gi|116482076|gb|EG524668.1|EG524668
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATCGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482089|gb|EG524681.1|EG524681
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482091|gb|EG524683.1|EG524683
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482084|gb|EG524676.1|EG524676
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482079|gb|EG524671.1|EG524671
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC