1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatgtaaatgcacctttgttttccgtcatacctagttagttcatacggctatattagttatgtcaacttgtgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTGGATGCCGGAAGATGCACTAACGGGAAG
species | Arabidopsis thaliana |
transcript | AT4G20095.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482090|gb|EG524682.1|EG524682
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCGGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482094|gb|EG524686.1|EG524686
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482098|gb|EG524690.1|EG524690
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482095|gb|EG524687.1|EG524687
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482075|gb|EG524667.1|EG524667
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482076|gb|EG524668.1|EG524668
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482089|gb|EG524681.1|EG524681
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482091|gb|EG524683.1|EG524683
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCGGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482084|gb|EG524676.1|EG524676
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTEST: gi|116482079|gb|EG524671.1|EG524671
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
EST: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAG AGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
genomic: CTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGgtaaatgtaa ... tgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCT
tcatacctagttagttcatacggctatattagttatgtcaacttgtgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTGGATGCCGGAAGATGCACTAACGGGAAG
tgtctctt CT-rich tract
tatattagttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtaaatgcacctttgttttccgtcatacctagttagttcatacggctatattagttatgtcaacttgtgtctcttagAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTGGATGCCGGAAGATGCACTAACGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG