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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcaattgctggcaactgtggtttacgaattaggttaaagctaggaaaaatagttctttacttgctgttactgttccaaccagtgaagtctcgtgtgactttttattggccattgcagGAGATGGAAAGGTCGACTGATGTTCTAGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTCTCCGCCAG

Basic information

species Arabidopsis thaliana
transcript AT4G16180.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16180.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G03880.1 (Glycine max), 3'ss of exon 3
gtgagtttcaattgctggcaactgtggtttacgaattag-gttaaagctaggaaaaatagttctttacttgctgttactgttccaaccagtgaagtctcgtgtgactttttattggccattgcagGAGATGGAAAGGTCGACTGATGTTCTAGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTCTCCGCCAG-------------
                 | | |||   |  |   || ||  |  ||| |   |||   |  |  | | ||  | || || |   ||| | |    |||     ||||||  |       || |||||||||||| | ||  ||||||| || |||||||| ||||| || |||||||||||    ||||| | ||||||||| |||||||||             
-----------------gtatctgaattgaattcatcagcatctaagattctaaatgcaaat--tgattt--tattgctttcttaactatt----tctatatggactttaaaccacattttacagGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTGACCCATCTCTTTCAAGTAAATATTTCCTCCGCCAGAATTGGATGGATG

upper sequence: AT4G16180.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G36720.1 (Glycine max), 3'ss of exon 3
gtgagtttcaattgctggcaactgtggtttacgaattag-gttaaagctaggaaaaatagttctttacttgctgttactgttccaaccagtgaagtctcgtgtgactttttattggc-cattgcagGAGATGGAAAGGTCGACTGATGTTCTAGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTCTCCGCCAG-------------
                   | |||   |  |   ||  |  |  ||| |   |||   |  |  ||| ||  | ||||| |   ||| | |         | ||   ||  |    |   || |||||||||||| | ||  ||||||| || |||||||| ||||| || |||||||||||    ||||| | ||||||||| ||||||||              
-----------------atatctgaattgaatacatccgcatctaagatgctaaatgcaaat--ttattt--tattactttcttaactaat-----tctatatggacttgaacccacattttacagGAGATGGAACGTTCCGCTGATGTGCTTGCTGCTGGATTGCTTGAAGTGTCTGACCCGTCTCTTTCAAGTAAATATTTCCTCCGCCAAAATTGGATGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgttactgttccaaccagtgaagtctcgtgtgactttttattggccattgcagGAGATGGAAAGGTCGACTGATGTTCTAGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTCTCCGCCAG
                                  actttttatt  TA-rich tract