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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccaatcataatgatttctgaatagaaactagcattaaaatccttctgaatcttgtgagatatgatattttatatttgcagAGGAATACTATTTATGCTCGGGTTGATTCTGCTCTACGCAAAATCCGTGAAACATCAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G16180.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426967|gb|EG469559.1|EG469559
EST:     CATTCTCAAACGTCTCCCTGATCAGTCAAATGCTTCAAGATGTTGCACTG                         AGGAATACTATTTATGCTCGGGTTGATTTTGCTCTACGCAAAATCCGTGAA
genomic: CATTCTCAAACGTCTCCCTGATCAGTCAAATGCTTCAAGATGTTGCACTGgtgagtccaa ... atatttgcagAGGAATACTATTTATGCTCGGGTTGATTCTGCTCTACGCAAAATCCGTGAA
EST: gi|116426969|gb|EG469561.1|EG469561
EST:     CATTTTCAAACGTCTCCCTGATCAGTCAAATGCTTCAAGATGTTGCACTG                         AGGAATACTATTTATGCTCGGGTTGATTCTGCTCTACGCAAAATCCGTGAA
genomic: CATTCTCAAACGTCTCCCTGATCAGTCAAATGCTTCAAGATGTTGCACTGgtgagtccaa ... atatttgcagAGGAATACTATTTATGCTCGGGTTGATTCTGCTCTACGCAAAATCCGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactagcattaaaatccttctgaatcttgtgagatatgatattttatatttgcagAGGAATACTATTTATGCTCGGGTTGATTCTGCTCTACGCAAAATCCGTGAAACATCAGAG
                             tgagatatgatatttt  TA-rich tract