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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAGATCCAATGCTCATGATGGAAGATGAGAGCCTCGTGTGGGCGAGCAGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGgtgagcaaaacacaacaacaatagaagtaaaaaacaatgagaaacctgctatcctgtcatcatatcgattttaatctcttgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G16180.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0077g00820.t01 (Vitis vinifera), 5'ss of exon 11
ATGTAGATCCAATGCTCATGATGGAAGATGAGAGCCTCGTGTGGGCGAGCAGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGgtgagcaaaacacaacaacaatagaagtaaaaaacaatgagaaacctgctatcctgtcatcatatcgattttaatctcttgtatttgcag-----------
|||| ||||||   || |||||||||||||| || || || ||| | || | |||||||||||||||||||||||||| |||||| ||||||||| | |||||||  | ||| |    |  |   || | |     ||  |   || |||   | |  || || ||   ||||   | | ||    | |            
ATGTCGATCCACACCTTATGATGGAAGATGAAAGTCTTGTATGGACAAGTAATGATGTTGTCATTGTGCTTCAGCATCAAAATGAAAAAATACCTCTAAGgtgagtcatacagatttgcctttttag-acatgcagatatgtttccagcttctcagaaattatttcttgtttacattatggttgcagtaatttgttcacat

upper sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0077g00200.t01 (Vitis vinifera), 5'ss of exon 5
ATGTAGATCCAATGCTCATGATGGAAGATGAGAGCCTCGTGTGGGCGAGCAGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGgtgagcaaaacacaacaacaatagaagtaaaaaacaatgagaaacctgctatcctgtcatcatatcgattttaatctcttgtatttgcag--------------
|||| ||||||   || |||||||||||||| || || || |||   || | |||||||||||||||||||||||||| |||||| ||||||||| | |||||||  | ||| |    |  |   |  | |     ||  |   || |||   | |  || || ||   ||||     ||||  ||||||              
ATGTCGATCCACACCTTATGATGGAAGATGAAAGTCTTGTATGGATAAGTAATGATGTTGTCATTGTGCTTCAGCATCAAAATGAAAAAATACCTCTAAGgtgagtcatacagatttgccctttta-cacatgcagatatgtttccagcttctcagaaattatttcttgttta---cattgtggttgcagtaatttgttcacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426967|gb|EG469559.1|EG469559
EST:     AGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAG                         TTATGTTTCTGAAACAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCG
genomic: AGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGgtgagcaaaa ... gtatttgcagTTATGTTTCTGAAACAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCG
EST: gi|116426969|gb|EG469561.1|EG469561
EST:     AGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAG                         TTATGTTTCTGAAACAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCG
genomic: AGTGATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGgtgagcaaaa ... gtatttgcagTTATGTTTCTGAAACAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCG