1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaattttatcatctcaaatttaactgtttctcataacgaacctaattacatataaaaatatgtcgatgaaaatgtggatttcatagctgtaaaaactacatcttaatgtttatgatactaatcttcaaaaatatttttggatttag
species | Arabidopsis thaliana |
transcript | AT4G16180.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTGEST: gi|116426974|gb|EG469566.1|EG469566
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
EST: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTGEST: gi|116426972|gb|EG469564.1|EG469564
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
EST: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaattttatcatctcaaatttaactgtttctcataacgaacctaattacatataaaaatatgtcgatgaaaatgtggatttcatagctgtaaaaactacatcttaatgtttatgatactaatcttcaaaaatatttttggatttag
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA