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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctgtaattttatcatctcaaatttaactgtttctcataacgaacctaattacatataaaaatatgtcgatgaaaatgtggatttcatagctgtaaaaactacatcttaatgtttatgatactaatcttcaaaaatatttttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTGGAGTCCGCATTTAACCAGCTTTACTCGTATATATTTGATATTGATGTGG

Basic information

species Arabidopsis thaliana
transcript AT4G16180.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426973|gb|EG469565.1|EG469565
EST:     TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG                         GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
EST: gi|116426974|gb|EG469566.1|EG469566
EST:     TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG                         GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
EST: gi|116426972|gb|EG469564.1|EG469564
EST:     TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAG                         GCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG
genomic: TGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGgttgctgtaa ... ttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactacatcttaatgtttatgatactaatcttcaaaaatatttttggatttagGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTGGAGTCCGCATTTAACCAGCTTTACTCGTATATATTTGATATTGATGTGG
                        tactaat  putative branch site (score: 1)
                                        tattttt  putative PPT
           ttaatgtttatgatac  TA-rich tract