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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGAGCCAGGTCATCCTCACTGGCATCACAGTGCTTTCCTTGACGTACGAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctccagcttaaattatgtgaatcatcatcatcatcatcagttagtctgaatttagctagaagaagaaggagaagaaatcgttgagtaatttgg...

Basic information

species Arabidopsis thaliana
transcript AT4G16180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G36730.1 (Glycine max), 5'ss of exon 1
TCGCGAGCCAGGTCATCCTCACTGGCATCACAGTGCTTTCCTTGACGTACGAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctccagcttaaattatgtgaatcatcatcatcatcatc-agttagtctgaatttagctagaagaagaaggagaagaaatcgttgagtaatttgg
  | ||  |  |||| ||||| ||||| ||| | || ||||  ||||||||||| || || |||||||| || ||||| ||||||||||| || |||||||| || | | |   ||   | |    ||  ||||  ||||  ||| | ||| |     | |   |  | |     |  |      | |             
GAGAGAATCCAGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTACGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCACTCTCGCGCCGAGgt-catttttctttttccgtcaacacaaaaatcaaaatcactatccaattaattgatgtgtgaatgcatgtgtctgtggttcgtgtag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426951|gb|EG469543.1|EG469543
EST:     GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG                         GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
EST: gi|116426950|gb|EG469542.1|EG469542
EST:     GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG                         GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
EST: gi|116426960|gb|EG469552.1|EG469552
EST:     GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG                         GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT