Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatacacttcttcttatagttatcaaaacacttgacttttcttagggactggttcaagtccttgttctttgactcgaacactgacaatctttcggattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGTGTTAAATGAATAGTTTCGTTTGGGACTTCCATTTTTGGATTTCTCCTGA

Basic information

species Arabidopsis thaliana
transcript AT4G14455.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164237892|gb|ES032548.1|ES032548
EST:     CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG                         GCTATTAAACTACATCAAAGGGTAA-TTTGGATACAAGAAGAAAGTAGAGT
genomic: CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAGgtaaaataca ... gattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
EST: gi|19877444|gb|AU238275.1|AU238275
EST:     CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG                         GCTATTAAAACTACATCAAAGGGTNAATTTGGATNCAAGAAGAAAGTAGAG
genomic: CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAGgtaaaataca ... gattttgcagGCTATTAAA-CTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAG
EST: gi|125027417|gb|EL099686.1|EL099686
EST:     TAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG                         GCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
genomic: TAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAGgtaaaataca ... gattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
EST: gi|86086356|gb|DR382115.1|DR382115
EST:     CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG                         GCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
genomic: CTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAGgtaaaataca ... gattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
EST: gi|19797719|gb|AU229427.1|AU229427
EST:     TGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG                         GCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT
genomic: TGTGCTCCTGTTCTTGATCATGTATTACCTTATTAGgtaaaataca ... gattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttcaagtccttgttctttgactcgaacactgacaatctttcggattttgcagGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGTAGAGTGTTAAATGAATAGTTTCGTTTGGGACTTCCATTTTTGGATTTCTCCTGA
                             cactgac  putative branch site (score: 2)
                                    aatcttt  TA-rich tract