1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAAATCGAGAATTTCCTTTACAATGCTCTAAATTCGTCTGTTATGTTGAATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAGgtttgatctattgatctcttcctctgcattcgaatcctgtttttatgtagattcatcaatgtttaacaaatgatattgattctgctctcgatcgaatttg...
species | Arabidopsis thaliana |
transcript | AT4G14455.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAG GGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGAEST: gi|86064864|gb|DR360621.1|DR360621
genomic: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAGgtttgatcta ... atttctgtagGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGA
EST: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAG GGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGAEST: gi|86064865|gb|DR360622.1|DR360622
genomic: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAGgtttgatcta ... atttctgtagGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGA
EST: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAG GGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGAEST: gi|86086356|gb|DR382115.1|DR382115
genomic: ATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAGgtttgatcta ... atttctgtagGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTGA
EST: CCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATG-ACTTTTCGAAG GGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTG
genomic: -CCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAAC-TTTCGAAGgtttgatcta ... atttctgtagGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAATCGAGAATTTCCTTTACAATGCTCTAAATTCGTCTGTTATGTTGAATCCTTCGTAAGAGAGTAGAATCGAAGACGAATCAAATGAACTTTCGAAGgtttgatctattgatctcttcctctgcattcgaatcctgtttttatgtagattcatcaatgtttaacaaatgatattgattctgctctcgatcgaatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctctcg