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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaataagatttcgtaccttttatatatgcatcaccccttttgtttttcgctatcaaaacttatatctgaataaaactcgattttaacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG

Basic information

species Arabidopsis thaliana
transcript AT4G14455.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877444|gb|AU238275.1|AU238275
EST:     TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG                         GTCTTTGAGAAGAAGTCTAATCGAAAA-GTTGCAAACTCATAGCTTATTTT
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: gi|86064864|gb|DR360621.1|DR360621
EST:     TGGACTCCGCGAGGGG-ATAATGTCGGGAACGATCAACCGCTTCAAGTTG                         GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: gi|86064865|gb|DR360622.1|DR360622
EST:     TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG                         GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: gi|86086356|gb|DR382115.1|DR382115
EST:     TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG                         GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: gi|164095232|gb|ES185573.1|ES185573
EST:     GGACTCCGCGAGGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG                         GTCTTTGAGAAGAAGTCTAATCGAAAAAGTT
genomic: GGACTCCGCGA-GGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttcgctatcaaaacttatatctgaataaaactcgattttaacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG
                                         ttttaac  putative branch site (score: 2)
               aaaacttatatctgaa  TA-rich tract