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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgaaagtttgatttcatctgtttcagtttgtagatctctatcacatgcttttcttctaagctatttgttgttgtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG

Basic information

species Arabidopsis thaliana
transcript AT4G14455.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877444|gb|AU238275.1|AU238275
EST:     GAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTG                         GGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
genomic: GAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGgtaagctgaa ... gtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
EST: gi|86064864|gb|DR360621.1|DR360621
EST:     GAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACAAAGTG                         GGGAACAAAATGGACTCCGCGAGGGG-ATAATGTCGGGAACGATCAACCGC
genomic: GAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGgtaagctgaa ... gtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
EST: gi|86064865|gb|DR360622.1|DR360622
EST:     GAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACAAAGTG                         GGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
genomic: GAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGgtaagctgaa ... gtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
EST: gi|86086356|gb|DR382115.1|DR382115
EST:     GAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACAAAGTG                         GGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
genomic: GAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGgtaagctgaa ... gtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGC
EST: gi|164095232|gb|ES185573.1|ES185573
EST:     GAATCATAACCGCTTGCTTGACAAAGTG                         GGGAACAAAATGGACTCCGCGAGGGGGGATAATGTCGGGAACGATCAACCG
genomic: GAATCATAACCGCTTGCTTGACAAAGTGgtaagctgaa ... gtatctctagGGGAACAAAATGGACTCCGCGA-GGGGGATAATGTCGGGAACGATCAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtagatctctatcacatgcttttcttctaagctatttgttgttgtatctctagGGGAACAAAATGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG
                                              tatctct  CT-rich tract
                                  tatttgtt  TA-rich tract