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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGGGCAATGCTTGCAACTGCTCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGCTTTCTAGAAAACGACATCACTGACACACAGgtgaatcttttgtcttcgacaaattttcctgaaaatacaagttcatgatagatagtgatatactaatttgcaagctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G13550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
GGCATGGGCAATGCTTGCAACTGCTCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGCTTTCTAGAAAACGACATCACTGACACACAGgtgaa---tcttttgtcttcgacaa-attttcctgaaaatacaagttcatgatagatagt--gatatactaatttgcaagctgcag---
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GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtag