Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGAAGATAAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcatttaacatgatttgtgtgcttgttag

Basic information

species Arabidopsis thaliana
transcript AT4G13550.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G20890.1 (Glycine max), 5'ss of exon 10
AGCGTGAAGATAAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcattta-acatgatt---tgtgtgcttgttag-------
||       | ||||||||||||||||||||||||||||| |||||||| ||||| || ||  |  | ||||| |||||||| || |  |||||||| ||||||||   ||        | | ||   |  | |  |  | |  |   |    | | |    ||||  |    | |     ||   ||  | |       
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtaagtttattatttctcacatacttgcatttcttccatttataatttgtttttaagttcttatttttatgcaaatgagcatgcatttacttgtatttac

upper sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G26510.1 (Glycine max), 5'ss of exon 4
AGCGTGAAGATAAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcatttaacatgatttgtgtgcttgttag---------------
||       | ||||||||||||||||||||||||||||| |||||||| ||| | || ||  |  | ||||| |||||||| || |  |||||||| ||||| ||   ||        | | ||   |  | |  |  | |        |  ||  |     ||     | |||| | |||   | ||               
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCACTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtatgtttattatttctcacatacttgcatttcttccatttatattttataatttgttttaagttc----ttatttttatgcaaatgagcaaaatgttatattt

upper sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 6
AGCGTGAAGAT-AAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacata----tcaccctgacgacaagcagct-taatgggca--tttaacatgatttgtgtgcttgttag----
    || || | ||||||||||| ||||||||||||||||| || ||||| |||||||| || ||  | || || || ||||| || || ||||| || |||| ||| ||||      |   ||  | | | ||    |    ||  |  ||  |   | |  ||| ||  |||    |   |  |    |  ||      
-AGATGCAGCTCAAATGGCATGTGTATGTGACTGGTCATAGTTTAGGTGGTGCATTAGCCACCCTTCTTGCGCTTGAGCTTTCATCAAGTCAATTGGCAAAgtgagttctttctctttttagtttacatgcttaagtgttttgcttcctccattcgtttatggtggccaacttttggttttctcctaaattctttcattcc