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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatatgcttcttctaacataacaatttttagttgaaaagtgggagtgagatggcacgtcgtcataaaacctcatggtttatatgttttctacgttcgcagAAAGTAAAAGACAGCTGGAGAGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGTTGCTCATCCTGTTTATCTCA

Basic information

species Arabidopsis thaliana
transcript AT4G13550.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os04g43030.1 (Oryza sativa), 3'ss of exon 13
gtcatatgct-tcttctaacataacaatttttagttgaaaagtgggagtgagatggcacgtcgtcataaaacctcatggtttatatgttttctacgttcgcagAAAGTAAAAGACAGCTGGAGAGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGTTGCTCATCCTGTTTATCTCA
  || || |  |||   |  ||   ||     | ||||||   |   |  | |   ||    | | |   |   ||| ||   | ||   |  |  |  ||||||||| |||||||||||||||||||| || ||  | || || ||||| ||||| || ||  | ||||||||||| ||||| |     || |||||||| |
--caaataccatctctcataatttgaaacaaaaattgaaagcagtctgcaataccacaatctgccttttgaaaccattgtgattttggacta-atttctgcagAAAGTGAAAGACAGCTGGAGAGTTGTCAATCACCGTGATATCATTCCTACAGTACCACGTCTTATGGGCTATTGCCATGTGGAAGCACCAGTTTATCTTA

upper sequence: AT4G13550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA10G26510.1 (Glycine max), 3'ss of exon 5
gtcatatgcttcttctaacataacaatttttagttgaaaagtgggagtgagatggcacgtcgtcataaaacctcatggtttatatgttttctacgttcgcagAAAGTAAAAGACAGCTGGAGAGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGTTGCTCATCCTGTTTATCTCA
|   | ||  |  |  |  || |   |   ||    | |  ||   ||    | |       |  ||||||    |    | | |   | ||   |  ||||| ||| ||||| |||||| ||||||| || || ||||| || || |||||||| || || |||||||| |||||||||||||  |  ||||| | |||  
gctttttgtcttctaaattatcatgttagataaagtagacatgtttgtttccttgtttacatttgtaaaact--gttaactgttttgctcctctatctgcagAGAGTTAAAGATAGCTGGCGAGTTGTGAATCACAGAGATATTATACCCACAGTTCCCCGATTAATGGGTTATTGTCATGTTGAGCGACCTGTATTTCTTG

upper sequence: AT4G13550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv05s0077g00490.t01 (Vitis vinifera), 3'ss of exon 1
gtcatatgcttcttctaacataacaatttttagttgaaaagtgggagtgagatggcacgtcgtc-ataaaacctca-------tggtttatatgttttctacgttcgcagAAAGTAAAAGACAGCTGGAGAGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGTTGCTCATCCTGTTTATCTCA
         ||||| |||| ||  |   | | |    |   |   | ||   |  ||  |  || |||    ||||        |  || | ||||   || |||  |||||||| ||||| || |||||||||||||| ||| |||| || || || ||||| || ||||| ||||| || || ||||||||||| |||||||| ||  
---------ttcttataacgtagtatcctcttgc-ataggttcttaatgtcttaacaattaatccatattttctcaattataacgcattttttgttgcttatgttttcagAAAGTTAAAGATAGTTGGAGAGTTGTAAATCATCGAGATATTATACCTACAGTTCCCCGCTTGATGGGTTACTGCCATGTTGCTCAACCTGTTTACCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagatggcacgtcgtcataaaacctcatggtttatatgttttctacgttcgcagAAAGTAAAAGACAGCTGGAGAGTTGTAAACCATAGAGACATAATTCCCACAGTCCCTCGCTTAATGGGCTATTGTCATGTTGCTCATCCTGTTTATCTCA
                                       ttttctac  CT-rich tract
                               tttatatgttttcta  TA-rich tract