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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcatttaacatgatttgtgtgcttgttagACGTGGGGCAATCACTGTTACCATGTACAACTTTGGATCTCCAAGAGTAGGCAACAAACAATTTGCTGAAATTTATAATCAG

Basic information

species Arabidopsis thaliana
transcript AT4G13550.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13550.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 3'ss of exon 6
---gtaagtac-tttgagaactcccttctcctacatatcaccctgacgacaa--gcagctta-atgggcatttaacat----gatttgtgtgcttgttagACGTGGGGCAATCACTGTTACCATGTACAACTTTGGATCTCCAAGAGTAGGCAACAAACAATTTGCTGAAATTTATAATCAG
      |||   |||  |  ||    | |  |   ||      |||    ||  |||  ||  ||    ||  ||  |      | | ||||  | |||| ||||||| |||  |||| || ||||| |||||||||||||| ||||| || ||||||  |||||||||| |||| ||| ||
agatccagtgtgtttatggtcttttctttatttattactggtttgagagtaatggcactttggatatagatacaattttctaattctttgtgtattttagGCGTGGGGTAATTTCTGTGACTATGTATAACTTTGGATCTCCTAGAGTTGGAAACAAAAGATTTGCTGAAGTTTACAATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccctgacgacaagcagcttaatgggcatttaacatgatttgtgtgcttgttagACGTGGGGCAATCACTGTTACCATGTACAACTTTGGATCTCCAAGAGTAGGCAACAAACAATTTGCTGAAATTTATAATCAG
                            atttaac  putative branch site (score: 3)
                            atttaacatgattt  TA-rich tract