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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacag

Basic information

species Arabidopsis thaliana
transcript AT4G11150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 5
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgat-tcactcattgttgttaacag
|||||||||||||||| | |||||||| ||||| || || ||||| |||||||||||||||||  | || || || |  ||||| | |||| | || | |||          |  ||  |         | || |  || || |||| || |  |     || || |    | ||     ||  |    |  ||||      | | |||  
CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgtttagctcgatttt------aatattcattttgttccaccaattccaa---agtttcaaccatgtatacaagtagttcagtaccactagaacatttaaac--

upper sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattact-tgttatgatccatcactcactgtctaggtttacttttttact-ttggttctctgatt-cactcattgttgttaacag
|||||| || || ||||| |||||||||||||| || || ||||| || || ||||||||||| ||||||||||| |  |||||||  || || |||| ||||   ||||  || |   ||  |||    ||| | ||| ||| |  || | |   || ||   ||    |||||||| |||  ||||  ||| | |||| |    |      
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgta---aaaaagaactgagtatagcagttcttattctgtgatgttagat-atttgttg-ctgaattg---tttttactgttgactctcgtattgctctcactcaaata-----

upper sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttact-ttggttctctgattcactcattgttgttaacag--
|||||| || || ||||| |||||||||||||| || || |||||||| || || |||||||| || |||||||| |  |||||||  || || |||| ||||         | || | |    |||||   | ||||  |  ||  | |||   | || |  ||| || |   | | || ||  | ||| |  |  ||| ||   ||     
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGCGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgta---------agttttttgtt-catag--cagttgtcttattctgtgacttg-tatccatatttgctgtccaattgtttgtattgtgactttcatattttttccaagtaaa

upper sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G37190.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacag
||| || || || ||||| |||||||||||||| || || ||||| || || || |||||||| ||||||||||| |  |||||||  || || |||| ||||  ||||| |||||   ||  |||    ||| |   | |  |     | |   || ||   ||   | |  |  ||  |||   |  | | |||| |    | |    
CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgta--aaaaaaaaattgcata--gcagttcttattcagtgttgttagatatttgttg-ctgaattctttatactg-ttgagtttcatattgctctcactcaaataa----

upper sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtat--gaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacag
|||||||||||| ||||| |||||||| ||||||||||| || || |||||||| ||||||||  |  | ||||| | ||||||||  ||||| |||| |||||  |     |||| |   ||     |     | ||  | || |  ||    | |  |      | | ||    | ||    ||| |   | | |   ||          
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttact-tggtttatataccccaattatcagtcaattggacatttca--tctttatgttatttgctgc---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125236162|gb|EL250247.1|EL250247
EST:     CACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAA
genomic: CACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAA
EST: gi|164173107|gb|ES066670.1|ES066670
EST:     GCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCC
genomic: GCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCC
EST: gi|164117797|gb|ES124630.1|ES124630
EST:     GAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAA
genomic: GAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAA
EST: gi|124730895|gb|EH822297.1|EH822297
EST:     CGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGAT
genomic: CGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGAT
EST: gi|124860564|gb|EH945001.1|EH945001
EST:     ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTA
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTA
EST: gi|163971523|gb|ES133029.1|ES133029
EST:     ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAA
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAA
EST: gi|125042597|gb|EL114866.1|EL114866
EST:     ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG                         ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGA
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGA