1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAACGACGGAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctttagtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctgattgttatcgatttggtttatttgaataatcgtag
species | Arabidopsis thaliana |
transcript | AT4G11150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA NAATTCAACATTGAGAAACTCCNGCTTGTTGAGGCGGAGAAGAANAAGATCEST: gi|124984362|gb|EL057024.1|EL057024
genomic: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATC
EST: CGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGEST: gi|124896741|gb|EH972955.1|EH972955
genomic: CGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAG
EST: TCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCEST: gi|164173790|gb|ES044537.1|ES044537
genomic: TCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATC
EST: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGEST: gi|164026549|gb|EL991750.1|EL991750
genomic: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAG
EST: GCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCEST: gi|86072192|gb|DR367949.1|DR367949
genomic: GCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGC
EST: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCEST: gi|124799046|gb|EH888725.1|EH888725
genomic: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATC
EST: CTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCEST: gi|164211311|gb|ES049917.1|ES049917
genomic: CTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATC
EST: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTEST: gi|124750633|gb|EH840763.1|EH840763
genomic: GCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACT
EST: GAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAA GAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAA
genomic: GAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctt ... ataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGACGGAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctttagtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctgattgttatcgatttggtttatttgaataatcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA