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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACAAAAATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttcatgtttctcatcattactttacatttaaatttttataaaagaacattatcagtgtttagatccggtttgatagtgtattttgaacatgtaatag

Basic information

species Arabidopsis thaliana
transcript AT4G11150.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125035284|gb|EL107553.1|EL107553
EST:     ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGAT
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGAT
EST: gi|164218157|gb|ES033713.1|ES033713
EST:     ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCG
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCG
EST: gi|164194920|gb|ES107700.1|ES107700
EST:     ATATTCCTT-CCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCG
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCG
EST: gi|164121272|gb|EL994343.1|EL994343
EST:     TCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAA
genomic: TCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAA
EST: gi|125215798|gb|EL229882.1|EL229882
EST:     ATATTCCTTTCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAA
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAA
EST: gi|124763747|gb|EH853877.1|EH853877
EST:     TCCTCCTAAATCTAATGGTCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAA
genomic: TCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAA
EST: gi|125318687|gb|EL332772.1|EL332772
EST:     ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTG
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTG
EST: gi|124803202|gb|EH891631.1|EH891631
EST:     ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTG
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTG
EST: gi|125228349|gb|EL242434.1|EL242434
EST:     ATATTCCTT-CCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTG
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTG
EST: gi|125201642|gb|EL216596.1|EL216596
EST:     ACATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGT
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGT
EST: gi|164066950|gb|ES124419.1|ES124419
EST:     ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTG                         CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGT
genomic: ATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttc ... catgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACAAAAATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttcatgtttctcatcattactttacatttaaatttttataaaagaacattatcagtgtttagatccggtttgatagtgtattttgaacatgtaatag

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