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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtacttaaaacaaatccctgatgcattcaaataaatatttgatatttggaacttttttttgtatatcctactggagattatgtaatcgtgtcggatggcaatctttttttgtgtgttttgatccgttctgctgatgtcattttgcatttcgaataccttttggtctgttaaagattctctcttgaattgttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G11150.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124811273|gb|EH896139.1|EH896139
EST:     CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124719185|gb|EH810587.1|EH810587
EST:     GCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: GCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124991238|gb|EL063507.1|EL063507
EST:     ATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: ATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124877872|gb|EH957309.1|EH957309
EST:     CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124984148|gb|EL056826.1|EL056826
EST:     TCGCGATGAGTATGCCTACTAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGT
genomic: TCGCGATGAGTATGCCTAC-AAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGT
EST: gi|125255884|gb|EL269969.1|EL269969
EST:     GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTG
genomic: GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTG
EST: gi|125139543|gb|EL178266.1|EL178266
EST:     TATGCCTACAAGCAGCTCCTCAAGGANCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: TATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124720294|gb|EH811696.1|EH811696
EST:     CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124881715|gb|EH960617.1|EH960617
EST:     ATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: ATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|125313552|gb|EL327637.1|EL327637
EST:     GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|124936057|gb|EL012993.1|EL012993
EST:     TCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: TCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|125001161|gb|EL073430.1|EL073430
EST:     GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCG
genomic: GTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCG
EST: gi|164001413|gb|EL993976.1|EL993976
EST:     TCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: TCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|164029959|gb|ES206001.1|ES206001
EST:     AAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: AAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
EST: gi|86072192|gb|DR367949.1|DR367949
EST:     TCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGGA-CTAATTGTTCAG                         GGTTTGCTTCGG
genomic: TCGCGATGAGTATGCCTACAAACAGCTCCTCAAGG-ATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGG
EST: gi|124711617|gb|EH803019.1|EH803019
EST:     CGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAG                         TGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG
genomic: CGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtactt ... attgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTGTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtacttaaaacaaatccctgatgcattcaaataaatatttgatatttggaacttttttttgtatatcctactggagattatgtaatcgtgtcggatggcaatctttttttgtgtgttttgatccgttctgctgatgtcattttgcatttcgaataccttttggtctgttaaagattctctcttgaattgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC