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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcattctcagaatctggtatacttggtcaaactatctgggatgtgtagtctccagctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG

Basic information

species Arabidopsis thaliana
transcript AT4G10000.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0001g06900.t01 (Vitis vinifera), 3'ss of exon 7
gtgagcattctcagaatctggtatacttggtcaaactatctgggatgtgtagtctccagctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG
|| |   | || |    ||   ||  |   | |   ||| |  | | | | || | |   |  ||||     ||  |||    |   | | |||  |  |    | | |  ||||| |||||||| ||||||||||||||| |||| |||||||||||||| ||| || | ||||| |||||   |  ||| |  ||| | |||| ||| || 
gt-attgtgcttatgcacttccattttattttagtttattttagtt-ttttgttttcttttgttagcacttttatttttcctctaattgaatgatcttgt----actatgaagCACATTGTTCACAGGATGGATGCCAACTATTCTTCGAGCAGGTAGAGGAATGACACTATGGGAAAAGGCCAGACTAGACCCACCAGCCAAAAAGCTGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG
                              cactgac  putative branch site (score: 2)
            aataagttttaattgt  TA-rich tract