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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttacgttcttgttctgtcaattggtttcgttttcatcattccatagcagtttttgttttccttctgtcgtcagtctttaaacttctgagaatgaaaatctgcagGTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG

Basic information

species Arabidopsis thaliana
transcript AT4G10000.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045280|gb|DR341035.1|DR341035
EST:     GGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAANNAGAT                         GTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG
genomic: GGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGATgtaattttac ... aaatctgcagGTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG
EST: gi|86045286|gb|DR341041.1|DR341041
EST:     GATCTATAAGACACAGAGAACTGGGTTAGAAGATCTGGCGGAAAAGAGAT                         GTTTCCATTTCTCGTCGACCCGA
genomic: GATCTATAAGACACAGAGAACTGG-TTAGAAGATCTGGCGGAAAAGAGATgtaattttac ... aaatctgcagGTTTCCATTTCTCGTCGACCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgttttccttctgtcgtcagtctttaaacttctgagaatgaaaatctgcagGTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG
                          tttaaactt  TA-rich tract