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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTCAGAAGGTAAAAAGGAGGAAGCAGCACAGAAATCGAGCAGTAATAATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgcttctttctttcgcaattttgagtttttgattggctcttgttacttgaaactttatgctgttgtgttctcatcaagtgtgtattgttcatttttgtgttcgatgttgtttctctaatatttctcagctgttgtttccag

Basic information

species Arabidopsis thaliana
transcript AT4G10000.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045285|gb|DR341040.1|DR341040
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|86045283|gb|DR341038.1|DR341038
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGGTTGCAAC
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGGTTGCAAC
EST: gi|86045284|gb|DR341039.1|DR341039
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|86045281|gb|DR341036.1|DR341036
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|124916526|gb|EH990400.1|EH990400
EST:     AAGTTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: AAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|86045280|gb|DR341035.1|DR341035
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|86045286|gb|DR341041.1|DR341041
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
EST: gi|86045282|gb|DR341037.1|DR341037
EST:     ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGCTTTCTCT                         GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG
genomic: ATACATCTAGCTTCTTGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTgtaagtgctt ... ttgtttccagGGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG