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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccgaatcatattttccagagagatggctcattaagcaatatacaaagtttatcctgacatttgttggtgacttgttgttcag

Basic information

species Arabidopsis thaliana
transcript AT4G10000.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G086971_T04 (Zea mays), 5'ss of exon 4
AGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaag-aaccgaatcatattttccagagagatggct-catt--aagcaat-atacaaagtttatcctgacatttgttggtgacttgttgttcag---------------------------------------------------------------------------
||||||||||||| ||| ||||||| ||||| |||||||| ||||| |||||||| | ||| ||    ||||   || ||  ||        ||  || ||||  ||||||  ||  ||   || | |    |   | |    |||||   | |||                                                                           
AGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggct--ctacttgcattccagttagtgctggccattgatgtagcattctgacgctgtcttcttagtggcgccaatttttattcctaactgtttcag

upper sequence: AT4G10000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G086971_T05 (Zea mays), 5'ss of exon 3
AGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaag-aaccgaatcatattttccagagagatggct-catt--aagcaat-atacaaagtttatcctgacatttgttggtgacttgttgttcag--------
||||||||||||| ||| ||||||| ||||| |||||||| ||||| |||||||| | ||| ||    ||||   || ||  ||        ||  || ||||  ||||||  ||  ||   || | |    |   | |    |||||   | |||        
AGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggct--ctacttgcattccagttagtgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045281|gb|DR341036.1|DR341036
EST:     TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA                         A
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcag-
EST: gi|86045281|gb|DR341036.1|DR341036
EST:     TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA                         A
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcag-
EST: gi|86045280|gb|DR341035.1|DR341035
EST:     TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA                         GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGA
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGA
EST: gi|86045286|gb|DR341041.1|DR341041
EST:     TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA                         GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGGTTAGAAG
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGG-TTAGAAG