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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatactcagattatcccaaaaaatttcttctccagtctcttttgatcttttgtcacccaagttaacttcagtctgatcaaaacatttcagGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTAT

Basic information

species Arabidopsis thaliana
transcript AT4G04860.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124713337|gb|EH804739.1|EH804739
EST:     CCTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTG                         GGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGA
genomic: CCTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGgtatatactc ... aacatttcagGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGA
EST: gi|125292653|gb|EL306738.1|EL306738
EST:     TTGGTGCCAGTGCTTGGGTGGATCTTTTG                         GGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGA
genomic: TTGGTGCCAGTGCTTGGGTGGATCTTTTGgtatatactc ... aacatttcagGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGA
EST: gi|124814233|gb|EH899099.1|EH899099
EST:     TGCCAGTGCTTGGGTGGATCTTTTG                         GGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCCA
genomic: TGCCAGTGCTTGGGTGGATCTTTTGgtatatactc ... aacatttcagGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttttgatcttttgtcacccaagttaacttcagtctgatcaaaacatttcagGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTAT
                                           aaaacattt  TA-rich tract