Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGgttggtaacttctgtttcccacaaatctaagtcgcctctaaatatcagcttatagtctcttgtgttccacag

Basic information

species Arabidopsis thaliana
transcript AT4G04860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04860.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv10s0116g00010.t01 (Vitis vinifera), 5'ss of exon 1
TGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGgttggt-aacttctgttt-cccacaaatctaagtcgcctc--taaatatcagcttatagtctcttgtgttccacag-------------------------------
||||||||| || ||||| || || || || |||||||||||  | ||||  |||||||| ||||| || ||||| ||||| ||||| || |||||||||||| || || || | ||| | |||| ||  |||  |  |   |   ||    | |   |   |   ||||    |                                
TGTTTTAACGGGGATTGTTCTCATTGGGGGGATGATACCATATGTATCAGAGTCATTTGCAAAAATTATATTCCTGAGCAATTCATTGACATTCATGATGgttagttaatttttctttgctcacacatagaagatgttttattggttacagtcattgtgcaacaactgttttggatgtcttgttactctgtttttcctgttgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125306944|gb|EL321029.1|EL321029
EST:     CTTTCATGATG                         GTCTATGTATGGAGCAAACAAAATCCTCATATTCACATGAGTTTCCTTGGT
genomic: CTTTCATGATGgttggtaact ... tgttccacagGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGT
EST: gi|124715747|gb|EH807149.1|EH807149
EST:     TTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATG                         GTCTATGTATGGAGCAAAACAAAATCCTTATATTCACATGAGTTTCCTT
genomic: TTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGgttggtaact ... tgttccacagGTCTATGTATGGAGCAAA-CAAAATCCTTATATTCACATGAGTTTCCTT
EST: gi|164173188|gb|ES168557.1|ES168557
EST:     CATCATTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATG                         GTCTATGTATGGAGCAAACAAAATCCTT
genomic: CATCATTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGgttggtaact ... tgttccacagGTCTATGTATGGAGCAAACAAAATCCTT