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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCgtaagaatcccatatacctagaccaacaaaatcattttttcccaaagagatccaatttaacttacagatctaaccatcatgcttcggtttctatcttgcaattatgtgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G59600.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077451|gb|DR373208.1|DR373208
EST:     CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGC                         AGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC
genomic: CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCgtaagaatcc ... gtgtttgcagAGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC
EST: gi|86076870|gb|DR372627.1|DR372627
EST:     CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGC                         AGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC
genomic: CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCgtaagaatcc ... gtgtttgcagAGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC
EST: gi|86079913|gb|DR375670.1|DR375670
EST:     CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGC                         AGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC
genomic: CACGGGAAGCTTTACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCgtaagaatcc ... gtgtttgcagAGAGTTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCC