1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtgtgaaaaagatctcaacttttaaaattttaagcctcctaaagtttgtttgttctgacttcaaattgattgcgtctctgtgtgtttgtggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCT
species | Arabidopsis thaliana |
transcript | AT3G59600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAAAAGTTCGATAAAG TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGEST: gi|86076870|gb|DR372627.1|DR372627
genomic: GCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
EST: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGEST: gi|164114913|gb|ES111262.1|ES111262
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
EST: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTEST: gi|86079913|gb|DR375670.1|DR375670
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTT
EST: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
tttgtttgttctgacttcaaattgattgcgtctctgtgtgtttgtggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCT
tggtaac putative branch site (score: 2)
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgaaaaagatctcaacttttaaaattttaagcctcctaaagtttgtttgttctgacttcaaattgattgcgtctctgtgtgtttgtggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - aaaaaga
- - - - - - - ctcaact
- - - - - - - - - - - - - - - - - - -tcctaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgtg