1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCTGGCTATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatgctttttctatgttagatttttggtgtatattgcatactcttttttacttgcttggataaatctcatgaatggttacagtaagttaggcca...
species | Arabidopsis thaliana |
transcript | AT3G59600.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCG GGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGEST: gi|164052422|gb|ES144028.1|ES144028
genomic: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatg ... tttgttacagGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAG
EST: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCG GGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACEST: gi|86076870|gb|DR372627.1|DR372627
genomic: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatg ... tttgttacagGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCAC
EST: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCG GGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGEST: gi|86079913|gb|DR375670.1|DR375670
genomic: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatg ... tttgttacagGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAG
EST: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCG GGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAG
genomic: CTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatg ... tttgttacagGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCTGGCTATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGgtactgcatgctttttctatgttagatttttggtgtatattgcatactcttttttacttgcttggataaatctcatgaatggttacagtaagttaggcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcttg