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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGAGCAATATTATCATGTTCGAGGATATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctacttttttttttaacctcagtcacgatttgtaatgcttgtcatggcttaaatcgagtttctgatatgaatcctagtttcttgtgtttgttttaa...

Basic information

species Arabidopsis thaliana
transcript AT3G59600.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077451|gb|DR373208.1|DR373208
EST:     GCAAAAAGTTCGATAAAG                         TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
genomic: GCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
EST: gi|86076870|gb|DR372627.1|DR372627
EST:     TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG                         TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
EST: gi|164114913|gb|ES111262.1|ES111262
EST:     TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG                         TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTT
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTT
EST: gi|86079913|gb|DR375670.1|DR375670
EST:     TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAG                         TTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG
genomic: TATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGgtatctactt ... ggtaacacagTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAG