Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTTGCCCTGAGATGTGTGGATCCTGAAGCACAGAAACGGCCTAAAATGAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGgtaaatatatacttaattcaccaaatttggacgaattctctggatatattgaacactttatcatactataacaagtgatggtccaattctacaggaattgttgtgtgttgtacatatggatatgcaaactaattttttttttccccgcag

Basic information

species Arabidopsis thaliana
transcript AT3G59110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 5
TCTTGTTGCCCTGAGATGTGTGGATCCTGAAGCACAGAAACGGCCTAAAATGAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGgtaaa-tatatacttaattcaccaaatttggacgaattctctggatatattgaacactttatcatactataacaagtgatggtccaattctacaggaattgttgtgtgttgtacatatggatatgcaaactaattttttttttccccgcag
||| ||||| || |||||||| ||||| |||||| | ||  |||| |||||||| ||||||||| ||||||||||| |||| ||| | || || || |||||    |  ||  |    ||  |  || |  |  | || |       | | | |  ||  ||| |  ||| |||| |    |     || |  |     || ||||| || | ||                                    
TCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGACGAATATCCATTCCGAGAGgttcccttcattatcttatcctctcatatatataacttttac-----tgtaggaatctgaatc-tcttatcacaatttggagc----ttttgga-----tgctgtgttttctcca------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164086501|gb|ES142472.1|ES142472
EST:     GAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAG                         GAGCGGAGGAACAGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACC
genomic: GAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGgtaaatatat ... ttccccgcagGAGCGGAGGAACAGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACC
EST: gi|163995510|gb|ES188496.1|ES188496
EST:     TGAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAG                         GAGCGGAGGAACAGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACC
genomic: TGAGCCAGGTTGTGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGgtaaatatat ... ttccccgcagGAGCGGAGGAACAGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACC