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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag

Basic information

species Arabidopsis thaliana
transcript AT3G59110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 5
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag-----------------------------------------------------------------------------------------------------------------
|||| || || |||||||  ||||||||||||||||| |||||||||||||| |   | ||  ||||||| ||||| ||  |||| |||||||| || ||||| ||       ||| |   |||||  |  |  | |    |||  |   ||  | |   |  ||||||    | ||  ||                                                                                                                 
TTGATGAAGAATTCAATGGCAAGCTTTCTGATTTTGGATTGGCCAAGCTCTTGGGTGCAGGGAAGAGTCATATCACAACTCGAGTTATGGGAACTTTCGGgtatgttgtttgcttg-atattctttcatttttgtagtaccttgcttgacta--actg--gaacatgtggtattacagtaggaacctttacatgttgagggatttgtttttcatgtttttagagcagtataaagttttgtggtgcttcacatgacatgaaaagaaccattcaccttttgttgctactgtttcag

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G010953_T01 (Zea mays), 5'ss of exon 3
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag------------------------------------------------------------------------------------------------
|||| || || |||||||  |||||||||||||||||  ||||||||||||| |   | ||  |||| || ||||| ||  |||| ||||| || || ||||| || |    ||| |     | ||    |  |||  ||||  |  ||  | |   | | ||  | |  | | |||  ||                                                                                                
TTGATGAAGAATTCAATGGCAAGCTTTCTGATTTTGGACTGGCCAAGCTCTTGGGTGCTGGGAAGAGCCATATCACAACGCGAGTTATGGGCACATTCGGgtatgtttt---tttatgggaacattccgaaatatgtcttttctt-cactaactggaacctgtagtcttcacacgcagtaggaagtttacatacagagctttgttttccaatttttaagaagaattagctctgcaggggaagcaaccattcatctttttatttcaccacggtttcag

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 6
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggtttt-----tgtatacatattattaacggtcatgtgt-atatgcatcag
|||||||||| |||||||||||| |||||||||||||  ||||||| || || || || || || |||||||| || || ||||| |||||||| ||||||||     ||||||| |   ||||||  | ||  |    ||      | ||| ||  |||  |||   | | |||  |     ||||
TTGACGATGAATTCAATGCAAAGGTTTCTGATTTTGGTCTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttttacttaaaggatttatgcac-ttaggaactcacttctgttgtggatttcag

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggttttt-gtatacatattattaacgg-tcatgtgtatat---gcatcag
|||| ||||| |||||||||||| ||||||||||||| |||||||| || || || || || || |||||||| || || ||||| |||||||| ||||||||     ||||||| |   ||||||  | ||  |    ||   | ||   ||   |||     |||  | | | |      ||||
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgtacacttaggaactcacttttgttttggatttcag

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 4
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtga--tgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag-------------------
 |||   ||| |||||||||||| ||||||| ||||| |||||||| || || || || || || |||||||| || || ||||| |||||||| |||||||| |   |   ||      ||  |||   |  | || | ||||  |  |   |||    |     |    |||    ||  |                   
-TGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGGtatgcacatgtttcagtatctacttgactactttatagattttatttaaaggattgcataaatagaaacttattcctattggacctgttcccaatttcagt

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 4
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaattt--gtaccctctttggtgatgatgggtttttgtatacat-attattaac--ggtcatgt-gtatatgcatcag-------
||||   ||| |||||||||||| ||||||| ||||| |||||||| || || || || || || |||||||| || || ||||| |||||||| |||||||| |   ||  |||  ||| |  || |   |||  |   |    |  | ||| | ||  |||    |||||| | |  ||   |         
TTGATACTGATTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGgtatgcagaatgtttcagtatctactatatagattttatttaaaggattgcattaatagaaacttactcatgttggacctgttcccaatttcag

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaa------tttgtaccctctttggtgatgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag----------------------------
|||| ||||| |||||||||||| ||||||||||||| |||||||||||||| | ||| ||||| || ||||| ||||| ||||| |||||||| |||||||| || || |        ||    || |||| ||  | || | |||||  |    ||| || |    |  | | |    || ||||                            
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatag-tttttccacctgtatgat-ataaattttttatgagagcctcagaacctgacatcttttctctggatttcag